PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48974.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 255aa    MW: 28757.8 Da    PI: 7.2964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48974.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.5e-164692455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  KHN48974.1 46 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 92
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.1464291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-164596No hitNo description
SuperFamilySSF474592.09E-2145120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-144692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-2146102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-184897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVDRKRKGRE HEESEFQSED VDFESPEAKK QVHGSTSTKR SRAAEVHNLS ERRRRDRINE  60
KMKALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM GYGMVPMMFP GIQQYMPPMG  120
MGIGMGMGME MGMGMNRPVM PFTNMLASST LPAATAAVHL GPRFPMPPFH MPHVAAPDSS  180
RMQGANHPDN NMLNSLGTLD PDQSRIPNFT DPYQQYLGLQ QAQLQLMQTM NQQNVSKPSS  240
SRGQENPEKH QSDET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620980.10.0PREDICTED: transcription factor PIF1-like isoform X2
SwissprotQ8GZM71e-53PIF1_ARATH; Transcription factor PIF1
TrEMBLA0A0B2SWP80.0A0A0B2SWP8_GLYSO; Transcription factor PIF1
TrEMBLI1LYS90.0I1LYS9_SOYBN; Uncharacterized protein
STRINGGLYMA13G19250.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-36phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]